Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative quinol monooxygenase | At1D1609_RS16235 | Not Available | Negative | 129100 - 129402 | 11684.7 |
| nad(p)h-dependent oxidoreductase | At1D1609_RS16240 | Not Available | Negative | 129420 - 130778 | 48956.5 |
| laci family dna-binding transcriptional regulator | At1D1609_RS16245 | Not Available | Negative | 131043 - 132056 | 37372.7 |
| d-altritol 5-dehydrogenase | At1D1609_RS16250 | Not Available | Negative | 132173 - 133183 | 34894.2 |
| galactitol 2-dehydrogenase | At1D1609_RS16255 | Not Available | Negative | 133200 - 133970 | 26835.4 |
| abc transporter substrate-binding protein | At1D1609_RS16260 | Not Available | Negative | 134230 - 135543 | 47806.6 |
| sugar kinase | At1D1609_RS16265 | Not Available | Positive | 135856 - 136863 | 34979.6 |
| d-tagatose-bisphosphate aldolase, class ii, non-catalytic subunit | At1D1609_RS16270 | Not Available | Positive | 136860 - 138137 | 45711.4 |
| carbohydrate abc transporter permease | At1D1609_RS16275 | Not Available | Positive | 138204 - 139076 | 31861.8 |
| carbohydrate abc transporter permease | At1D1609_RS16280 | Not Available | Positive | 139088 - 139912 | 30268.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


