Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | At1D1609_RS16190 | Not Available | Negative | 119767 - 121038 | 45632.6 |
| helix-turn-helix domain-containing protein | At1D1609_RS16195 | Not Available | Positive | 121125 - 122021 | 33217.9 |
| arac family transcriptional regulator | At1D1609_RS16200 | Not Available | Negative | 122018 - 122863 | 31460.8 |
| hypothetical protein | At1D1609_RS29760 | Not Available | Negative | 122842 - 123093 | 9366.86 |
| mfs transporter | At1D1609_RS16205 | Not Available | Positive | 122987 - 124195 | 42820.3 |
| lysr substrate-binding domain-containing protein | At1D1609_RS16210 | Not Available | Positive | 124281 - 125177 | 33859.0 |
| trap transporter large permease | At1D1609_RS16215 | Not Available | Negative | 125202 - 126482 | 45187.7 |
| trap transporter small permease | At1D1609_RS16220 | Not Available | Negative | 126486 - 127037 | 19814.0 |
| dctp family trap transporter solute-binding subunit | At1D1609_RS16225 | Not Available | Negative | 127167 - 128162 | 35922.2 |
| nad(p)-dependent oxidoreductase | At1D1609_RS16230 | Not Available | Negative | 128185 - 129087 | 30985.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


