Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | At1D1609_RS16140 | Not Available | Negative | 109395 - 110138 | 25731.7 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | At1D1609_RS16145 | Not Available | Negative | 110135 - 110959 | 30350.0 |
| nad-dependent epimerase/dehydratase family protein | At1D1609_RS16150 | Not Available | Positive | 111098 - 111895 | 29130.7 |
| fadr/gntr family transcriptional regulator | At1D1609_RS16155 | Not Available | Positive | 112006 - 112743 | 26629.8 |
| cupin domain-containing protein | At1D1609_RS16160 | Not Available | Positive | 112786 - 113103 | 11775.8 |
| m24 family metallopeptidase | At1D1609_RS16165 | Not Available | Negative | 113112 - 114344 | 43236.5 |
| aldo/keto reductase | At1D1609_RS16170 | Not Available | Negative | 114677 - 116680 | 72906.9 |
| abc transporter atp-binding protein | At1D1609_RS16175 | Not Available | Negative | 116726 - 117811 | 39235.1 |
| carbohydrate abc transporter permease | At1D1609_RS16180 | Not Available | Negative | 117821 - 118657 | 30774.9 |
| carbohydrate abc transporter permease | At1D1609_RS16185 | Not Available | Negative | 118654 - 119514 | 31705.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


