Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | At1D1609_RS16090 | Not Available | Negative | 99285 - 100385 | 39648.5 |
| carbohydrate abc transporter permease | At1D1609_RS16095 | Not Available | Negative | 100388 - 101272 | 32802.6 |
| carbohydrate abc transporter permease | At1D1609_RS16100 | Not Available | Negative | 101277 - 102158 | 33123.0 |
| helix-turn-helix domain-containing protein | At1D1609_RS16105 | Not Available | Positive | 102371 - 103297 | 35109.2 |
| trap transporter large permease | At1D1609_RS16110 | Not Available | Negative | 103327 - 104607 | 44954.1 |
| trap transporter small permease | At1D1609_RS16115 | Not Available | Negative | 104608 - 105129 | 18878.5 |
| trap transporter substrate-binding protein | At1D1609_RS16120 | Not Available | Negative | 105199 - 106176 | 35947.5 |
| amidohydrolase family protein | At1D1609_RS16125 | Not Available | Negative | 106321 - 107199 | 31935.1 |
| d-galactarolactone cycloisomerase | At1D1609_RS16130 | Not Available | Negative | 107196 - 108332 | 41498.8 |
| 5-dehydro-4-deoxyglucarate dehydratase | At1D1609_RS16135 | Not Available | Negative | 108369 - 109280 | 32404.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


