Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | At1D1609_RS16040 | Not Available | Positive | 88473 - 88709 | 8380.89 |
| macb family efflux pump subunit | At1D1609_RS16045 | Not Available | Negative | 88723 - 90681 | 68744.2 |
| efflux rnd transporter periplasmic adaptor subunit | At1D1609_RS16050 | Not Available | Negative | 90685 - 91908 | 42525.1 |
| hypothetical protein | At1D1609_RS16055 | Not Available | Negative | 91931 - 92227 | 11328.6 |
| hypothetical protein | At1D1609_RS16060 | Not Available | Negative | 92355 - 92981 | 21590.0 |
| response regulator | At1D1609_RS16065 | Not Available | Positive | 93184 - 93915 | 27136.7 |
| atp-binding protein | At1D1609_RS16070 | Not Available | Positive | 93912 - 95174 | 45162.2 |
| glycoside hydrolase family 105 protein | At1D1609_RS16075 | Not Available | Negative | 95177 - 96301 | 40917.2 |
| glycoside hydrolase family 28 protein | At1D1609_RS16080 | Not Available | Negative | 96310 - 97863 | 55287.4 |
| abc transporter substrate-binding protein | At1D1609_RS16085 | Not Available | Negative | 97973 - 99241 | 45791.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


