Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| age family epimerase/isomerase | At1D1609_RS26755 | Not Available | Positive | 58928 - 59899 | 35298.4 |
| age family epimerase/isomerase | At1D1609_RS26760 | Not Available | Negative | 60132 - 60716 | 22205.9 |
| rolb family protein | At1D1609_RS26765 | Not Available | Positive | 61613 - 62293 | 25768.0 |
| hypothetical protein | At1D1609_RS26770 | Not Available | Negative | 62860 - 63219 | 13592.2 |
| indoleacetamide hydrolase | At1D1609_RS26775 | Not Available | Negative | 64016 - 65419 | 49808.1 |
| tryptophan 2-monooxygenase | At1D1609_RS26780 | Not Available | Positive | 65831 - 68032 | 81466.8 |
| adenylate dimethylallyltransferase ipt | At1D1609_RS26785 | Not Available | Positive | 68727 - 69449 | 27033.7 |
| rolb family protein | At1D1609_RS26790 | Not Available | Positive | 69960 - 70526 | 21034.9 |
| rolb family protein | At1D1609_RS26795 | Not Available | Negative | 71011 - 71634 | 23452.4 |
| lysopine/octopine dehydrogenase | At1D1609_RS26805 | Not Available | Negative | 72513 - 73589 | 38799.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


