Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | At1D1609_RS15845 | Not Available | Negative | 44321 - 45610 | 47036.5 |
| abc transporter atp-binding protein | At1D1609_RS15850 | Not Available | Negative | 45641 - 46726 | 38643.6 |
| 3'-5' exonuclease | At1D1609_RS15855 | Not Available | Negative | 46909 - 47889 | 36818.1 |
| hypothetical protein | At1D1609_RS15860 | Not Available | Positive | 48081 - 48983 | 32315.8 |
| hypothetical protein | At1D1609_RS15865 | Not Available | Negative | 49020 - 49433 | 14976.8 |
| transglycosylase slt domain-containing protein | At1D1609_RS15870 | Not Available | Negative | 49607 - 50500 | 32194.2 |
| methyl-accepting chemotaxis protein | At1D1609_RS15875 | Not Available | Negative | 50827 - 52611 | 64222.5 |
| voc family protein | At1D1609_RS15880 | Not Available | Positive | 52883 - 53356 | 17070.0 |
| extracellular solute-binding protein | At1D1609_RS15885 | Not Available | Positive | 53619 - 54962 | 49806.2 |
| carbohydrate abc transporter permease | At1D1609_RS15890 | Not Available | Positive | 55045 - 55935 | 32814.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


