Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | At1D1609_RS15795 | Not Available | Positive | 33685 - 34566 | 31856.6 |
| chromate efflux transporter | At1D1609_RS15800 | Not Available | Negative | 34570 - 35778 | 41318.1 |
| hypothetical protein | At1D1609_RS15805 | Not Available | Negative | 35965 - 36447 | 17310.3 |
| hypothetical protein | At1D1609_RS15810 | Not Available | Negative | 36584 - 37126 | 19826.4 |
| tyrosyl-trna deacylase | At1D1609_RS15815 | Not Available | Negative | 37348 - 39216 | 67920.4 |
| hypothetical protein | At1D1609_RS15820 | Not Available | Negative | 39275 - 40108 | 30560.1 |
| hypothetical protein | At1D1609_RS15825 | Not Available | Positive | 40751 - 41644 | 32361.7 |
| aspartate/glutamate racemase family protein | At1D1609_RS15830 | Not Available | Negative | 41536 - 42339 | 27871.5 |
| abc transporter permease | At1D1609_RS15835 | Not Available | Negative | 42351 - 43169 | 29669.6 |
| abc transporter permease | At1D1609_RS15840 | Not Available | Negative | 43174 - 44085 | 33726.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


