Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| age family epimerase/isomerase | At1D1609_RS26690 | Not Available | Positive | 49424 - 50442 | 37399.7 |
| conjugative transfer signal peptidase traf | At1D1609_RS26695 | Not Available | Positive | 50439 - 50969 | 18691.6 |
| age family epimerase/isomerase | At1D1609_RS26700 | Not Available | Positive | 50890 - 51243 | 13059.2 |
| protein virf | At1D1609_RS26705 | Not Available | Positive | 51488 - 52096 | 22438.5 |
| had family hydrolase | At1D1609_RS26720 | Not Available | Positive | 53679 - 54311 | 24002.1 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | At1D1609_RS26730 | Not Available | Positive | 55013 - 55504 | 17791.4 |
| is110 family transposase | At1D1609_RS26735 | Not Available | Negative | 55588 - 56526 | 34647.9 |
| age family epimerase/isomerase | At1D1609_RS26740 | Not Available | Negative | 56755 - 56952 | 7468.95 |
| age family epimerase/isomerase | At1D1609_RS26745 | Not Available | Negative | 57077 - 57878 | 29314.4 |
| age family epimerase/isomerase | At1D1609_RS30075 | Not Available | Negative | 57868 - 58806 | 35408.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


