Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS20400 | Not Available | Positive | 1039743 - 1040228 | 18760.3 |
| hypothetical protein | At1D1609_RS20405 | Not Available | Positive | 1040185 - 1040769 | 22122.4 |
| hypothetical protein | At1D1609_RS20410 | Not Available | Positive | 1040766 - 1040987 | 8069.75 |
| Carboxylate-amine ligase | At1D1609_RS30005 | Not Available | Positive | 1041119 - 1041265 | 5401.58 |
| hypothetical protein | At1D1609_RS20420 | Not Available | Positive | 1041402 - 1041758 | 12876.6 |
| hypothetical protein | At1D1609_RS20425 | Not Available | Positive | 1041755 - 1042078 | 13073.0 |
| Putative ribonuclease h | At1D1609_RS20430 | Not Available | Positive | 1042075 - 1042932 | 31447.4 |
| hypothetical protein | At1D1609_RS20435 | Not Available | Positive | 1042929 - 1043357 | 15909.3 |
| duf6362 family protein | At1D1609_RS20440 | Not Available | Positive | 1043354 - 1043968 | 23446.8 |
| Trna-met; | Not Available | Not Available | Positive | 1044208 - 1044277 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


