Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Integrase | At1D1609_RS20350 | Not Available | Negative | 1033763 - 1034803 | 39247.5 |
| hypothetical protein | At1D1609_RS20360 | Not Available | Negative | 1034952 - 1035383 | 16285.2 |
| hypothetical protein | At1D1609_RS20365 | Not Available | Negative | 1035380 - 1036048 | 24563.0 |
| Hypothetical protein | At1D1609_RS20370 | Not Available | Negative | 1036045 - 1036653 | 21809.8 |
| Phage antirepressor protein | At1D1609_RS20375 | Not Available | Negative | 1036709 - 1037512 | 30300.1 |
| Ci repressor | At1D1609_RS20380 | Not Available | Negative | 1037581 - 1038300 | 27049.6 |
| Prophage repressor | At1D1609_RS20385 | Not Available | Positive | 1038392 - 1038646 | 9359.11 |
| hypothetical protein | At1D1609_RS29480 | Not Available | Positive | 1038643 - 1038804 | 5946.35 |
| Helix-turn-helix dna binding domain protein | At1D1609_RS20390 | Not Available | Positive | 1038801 - 1039265 | 17939.2 |
| hypothetical protein | At1D1609_RS29485 | Not Available | Positive | 1039456 - 1039746 | 10817.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


