Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | At1D1609_RS28415 | Not Available | Negative | 236052 - 236450 | 14969.1 |
| tn3 family transposase | At1D1609_RS28420 | Not Available | Positive | 236453 - 236884 | 16656.1 |
| glycerophosphodiester phosphodiesterase family protein | At1D1609_RS28425 | Not Available | Negative | 236894 - 237883 | 36112.6 |
| permease | At1D1609_RS28430 | Not Available | Positive | 238138 - 238827 | 25249.4 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | At1D1609_RS28435 | Not Available | Positive | 239296 - 239538 | 9084.86 |
| type ii toxin-antitoxin system vapc family toxin | At1D1609_RS28440 | Not Available | Positive | 239538 - 239957 | 15057.1 |
| site-specific integrase | At1D1609_RS28445 | Not Available | Positive | 239947 - 241113 | 42813.5 |
| duf305 domain-containing protein | At1D1609_RS28450 | Not Available | Positive | 241215 - 241724 | 18790.3 |
| ggdef domain-containing protein | At1D1609_RS28455 | Not Available | Negative | 241796 - 242533 | 26598.2 |
| Attl | Not Available | Not Available | Positive | 1033562 - 1033615 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


