Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toll/interleukin-1 receptor domain-containing protein | At1D1609_RS28365 | Not Available | Negative | 223853 - 224968 | 41710.8 |
| trypsin-like peptidase domain-containing protein | At1D1609_RS28370 | Not Available | Negative | 225145 - 225921 | 28411.4 |
| hypothetical protein | At1D1609_RS28375 | Not Available | Negative | 226011 - 226805 | 30294.8 |
| pin domain-containing protein | At1D1609_RS28380 | Not Available | Negative | 226996 - 228138 | 41600.9 |
| atp-binding protein | At1D1609_RS28385 | Not Available | Negative | 228263 - 230365 | 79408.4 |
| smc-scp complex subunit scpb | At1D1609_RS28390 | Not Available | Negative | 230455 - 231135 | 25020.7 |
| duf1403 family protein | At1D1609_RS28395 | Not Available | Negative | 231138 - 232091 | 34361.8 |
| site-specific integrase | At1D1609_RS28400 | Not Available | Positive | 232215 - 233348 | 41151.2 |
| methyl-accepting chemotaxis protein | At1D1609_RS28405 | Not Available | Negative | 233763 - 235685 | 68611.2 |
| tn3 family transposase | At1D1609_RS30120 | Not Available | Positive | 235883 - 236017 | 4676.79 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


