Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS28315 | Not Available | Negative | 211655 - 212077 | 15616.1 |
| type iv toxin-antitoxin system abiei family antitoxin domain-containing protein | At1D1609_RS28320 | Not Available | Positive | 212809 - 213654 | 31630.7 |
| nucleotidyl transferase abieii/abigii toxin family protein | At1D1609_RS28325 | Not Available | Positive | 213644 - 214579 | 35342.4 |
| hypothetical protein | At1D1609_RS28330 | Not Available | Positive | 214579 - 215433 | 31875.8 |
| type i restriction endonuclease | At1D1609_RS28335 | Not Available | Positive | 215442 - 217778 | 85470.2 |
| tigr02391 family protein | At1D1609_RS28340 | Not Available | Positive | 217775 - 218575 | 29774.6 |
| abc-three component system protein | At1D1609_RS28345 | Not Available | Positive | 218790 - 219956 | 43447.9 |
| three component abc system middle component | At1D1609_RS28350 | Not Available | Positive | 219953 - 220459 | 18442.6 |
| duf3732 domain-containing protein | At1D1609_RS28355 | Not Available | Positive | 220459 - 222438 | 74145.5 |
| hypothetical protein | At1D1609_RS28360 | Not Available | Negative | 222519 - 223856 | 50382.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


