Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | At1D1609_RS30110 | Not Available | Negative | 201789 - 201968 | 6827.3 |
| tn3 family transposase | At1D1609_RS30115 | Not Available | Positive | 202534 - 202692 | 5632.91 |
| virk family protein | At1D1609_RS28275 | Not Available | Negative | 202741 - 203178 | 15830.0 |
| cytochrome p450 | At1D1609_RS28280 | Not Available | Negative | 203450 - 204625 | 43905.6 |
| cytochrome p450 | At1D1609_RS28285 | Not Available | Negative | 204694 - 205962 | 47522.4 |
| tn3 family transposase | At1D1609_RS28290 | Not Available | Negative | 206190 - 207799 | 57399.7 |
| is66 family insertion sequence element accessory protein tnpb | At1D1609_RS28295 | Not Available | Negative | 207841 - 208194 | 13920.0 |
| is66-like element accessory protein tnpa | At1D1609_RS28300 | Not Available | Negative | 208178 - 208657 | 16879.4 |
| zeta toxin family protein | At1D1609_RS28305 | Not Available | Negative | 208898 - 210763 | 70309.6 |
| hypothetical protein | At1D1609_RS28310 | Not Available | Negative | 210753 - 211097 | 13408.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


