Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| entry exclusion protein trbk | At1D1609_RS28215 | Not Available | Negative | 188439 - 188639 | 7276.9 |
| p-type conjugative transfer protein trbj | At1D1609_RS28220 | Not Available | Negative | 188636 - 189433 | 29346.4 |
| conjugal transfer protein trbe | At1D1609_RS28225 | Not Available | Negative | 189411 - 191861 | 91557.2 |
| conjugal transfer protein trbd | At1D1609_RS28230 | Not Available | Negative | 191872 - 192171 | 11336.3 |
| trbc/virb2 family protein | At1D1609_RS28235 | Not Available | Negative | 192164 - 192544 | 12466.3 |
| p-type conjugative transfer atpase trbb | At1D1609_RS28240 | Not Available | Negative | 192534 - 193511 | 35212.6 |
| acyl-homoserine-lactone synthase trai | At1D1609_RS28245 | Not Available | Negative | 193522 - 194145 | 22653.4 |
| tn3 family transposase | At1D1609_RS28255 | Not Available | Positive | 194641 - 197616 | 111781.0 |
| acvb/virj family lysyl-phosphatidylglycerol hydrolase | At1D1609_RS28260 | Not Available | Negative | 197636 - 198358 | 26424.5 |
| two-component system vira-like sensor kinase | At1D1609_RS28265 | Not Available | Negative | 198937 - 201426 | 91645.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


