Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS29575 | Not Available | Positive | 39435 - 41936 | 92984.4 |
| type iv secretion system effector chaperone vire1 | At1D1609_RS26655 | Not Available | Positive | 42389 - 42586 | 7230.64 |
| type iv secretion system single-stranded dna binding effector vire2 | At1D1609_RS26660 | Not Available | Positive | 42591 - 44192 | 60590.8 |
| vira/g regulated protein | At1D1609_RS26665 | Not Available | Positive | 44258 - 46276 | 75705.0 |
| hypothetical protein | At1D1609_RS29580 | Not Available | Positive | 46560 - 46718 | 5811.88 |
| integration host factor subunit beta | At1D1609_RS26670 | Not Available | Positive | 46888 - 47196 | 11564.7 |
| hypothetical protein | At1D1609_RS26675 | Not Available | Positive | 47193 - 47612 | 16231.6 |
| cold-shock protein | At1D1609_RS26680 | Not Available | Positive | 47626 - 47928 | 11031.9 |
| amino acid transporter | At1D1609_RS26685 | Not Available | Positive | 48251 - 48751 | 19653.7 |
| age family epimerase/isomerase | At1D1609_RS29820 | Not Available | Positive | 48983 - 49351 | 13986.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


