Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plp-dependent aminotransferase family protein | At1D1609_RS27780 | Not Available | Negative | 98669 - 100123 | 53239.8 |
| tn3 family transposase | At1D1609_RS30225 | Not Available | Positive | 100241 - 100453 | 7565.97 |
| isl3 family transposase | At1D1609_RS27785 | Not Available | Negative | 100523 - 102076 | 58328.8 |
| tn3 family transposase | At1D1609_RS27790 | Not Available | Positive | 102199 - 102432 | 8521.13 |
| hypothetical protein | At1D1609_RS27795 | Not Available | Positive | 102442 - 102774 | 12261.2 |
| iclr family transcriptional regulator | At1D1609_RS27800 | Not Available | Negative | 103120 - 103890 | 28067.4 |
| trap transporter large permease | At1D1609_RS27805 | Not Available | Negative | 103977 - 105299 | 46212.8 |
| trap transporter small permease | At1D1609_RS27810 | Not Available | Negative | 105305 - 105889 | 20960.0 |
| trap transporter substrate-binding protein | At1D1609_RS27815 | Not Available | Negative | 105886 - 106929 | 38149.7 |
| aldehyde dehydrogenase | At1D1609_RS27820 | Not Available | Positive | 107254 - 108702 | 51317.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


