Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | At1D1609_RS27680 | Not Available | Negative | 79038 - 79925 | 32763.6 |
| abc transporter substrate-binding protein | At1D1609_RS27685 | Not Available | Negative | 80040 - 81041 | 35833.5 |
| pyrroline-5-carboxylate reductase family protein | At1D1609_RS27690 | Not Available | Negative | 81109 - 81909 | 28132.8 |
| tetr/acrr family transcriptional regulator | At1D1609_RS27695 | Not Available | Negative | 81917 - 82546 | 24194.6 |
| nadh:flavin oxidoreductase | At1D1609_RS27700 | Not Available | Positive | 82693 - 84729 | 74592.1 |
| dimethylsulfoniopropionate lyase | At1D1609_RS27705 | Not Available | Positive | 84732 - 85337 | 22870.1 |
| electron transfer flavoprotein subunit beta/fixa family protein | At1D1609_RS27710 | Not Available | Positive | 85377 - 86126 | 26592.4 |
| electron transfer flavoprotein subunit alpha/fixb family protein | At1D1609_RS27715 | Not Available | Positive | 86151 - 87080 | 31361.5 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | At1D1609_RS27720 | Not Available | Positive | 87107 - 88234 | 40016.4 |
| s-(hydroxymethyl)glutathione synthase | At1D1609_RS27725 | Not Available | Positive | 88353 - 88925 | 20379.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


