Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formyltetrahydrofolate deformylase | At1D1609_RS27575 | Not Available | Positive | 61762 - 62646 | 32924.7 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | At1D1609_RS27580 | Not Available | Positive | 62653 - 63552 | 31116.8 |
| trimethylamine methyltransferase family protein | At1D1609_RS27585 | Not Available | Negative | 63984 - 64271 | 11325.6 |
| tn3 family transposase | At1D1609_RS27590 | Not Available | Negative | 64359 - 65410 | 38950.2 |
| abc transporter permease | At1D1609_RS27595 | Not Available | Negative | 65403 - 66290 | 32453.1 |
| glycine betaine abc transporter substrate-binding protein | At1D1609_RS27600 | Not Available | Negative | 66487 - 67482 | 35862.6 |
| lysr substrate-binding domain-containing protein | At1D1609_RS27605 | Not Available | Negative | 68076 - 69005 | 34517.3 |
| formaldehyde dehydrogenase, glutathione-independent | At1D1609_RS27610 | Not Available | Negative | 69259 - 70449 | 41923.7 |
| hybrid-cluster nad(p)-dependent oxidoreductase | At1D1609_RS27615 | Not Available | Negative | 70558 - 71709 | 41448.1 |
| aromatic ring-hydroxylating oxygenase subunit alpha | At1D1609_RS27620 | Not Available | Negative | 71706 - 72953 | 47038.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


