Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family insertion sequence element accessory protein tnpb | At1D1609_RS26595 | Not Available | Negative | 29208 - 29399 | 7338.99 |
| tyrosine-type recombinase/integrase | At1D1609_RS26600 | Not Available | Positive | 29602 - 30831 | 45390.0 |
| tyrosine-type recombinase/integrase | At1D1609_RS26605 | Not Available | Positive | 30825 - 31739 | 33774.6 |
| tyrosine-type recombinase/integrase | At1D1609_RS26610 | Not Available | Positive | 31736 - 32725 | 36940.4 |
| transposase | At1D1609_RS26615 | Not Available | Negative | 32875 - 33267 | 14452.4 |
| conjugal transfer protein virc2 | At1D1609_RS26620 | Not Available | Negative | 33393 - 34001 | 22695.4 |
| conjugal transfer atpase virc1 | At1D1609_RS26625 | Not Available | Negative | 34004 - 34699 | 25699.3 |
| t-dna border endonuclease subunit vird1 | At1D1609_RS26630 | Not Available | Positive | 34968 - 35411 | 16216.5 |
| t-dna border endonuclease vird2 | At1D1609_RS26635 | Not Available | Positive | 35445 - 36719 | 47632.3 |
| type iv secretion system atpase vird4 | At1D1609_RS26640 | Not Available | Positive | 37373 - 39343 | 72453.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


