Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | At1D1609_RS27525 | Not Available | Negative | 50340 - 50498 | 6036.25 |
| aldehyde dehydrogenase family protein | At1D1609_RS27530 | Not Available | Negative | 50650 - 52125 | 52847.9 |
| sdr family oxidoreductase | At1D1609_RS27535 | Not Available | Negative | 52150 - 52866 | 25087.2 |
| dihydrodipicolinate synthase family protein | At1D1609_RS27540 | Not Available | Negative | 53041 - 53913 | 32099.4 |
| fad-binding oxidoreductase | At1D1609_RS27545 | Not Available | Negative | 53943 - 55301 | 49260.7 |
| lysr substrate-binding domain-containing protein | At1D1609_RS27550 | Not Available | Positive | 55425 - 56345 | 34803.7 |
| gcvt family protein | At1D1609_RS27555 | Not Available | Negative | 56482 - 58929 | 90444.0 |
| electron transfer flavoprotein subunit alpha/fixb family protein | At1D1609_RS27560 | Not Available | Negative | 59003 - 59932 | 31391.5 |
| electron transfer flavoprotein subunit beta/fixa family protein | At1D1609_RS27565 | Not Available | Negative | 59957 - 60706 | 26616.4 |
| helix-turn-helix domain-containing protein | At1D1609_RS27570 | Not Available | Positive | 60937 - 61542 | 21944.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


