Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | At1D1609_RS27475 | Not Available | Positive | 40091 - 41023 | 34328.5 |
| hydrolase | At1D1609_RS27480 | Not Available | Positive | 41302 - 41991 | 25413.2 |
| xapx domain-containing protein | At1D1609_RS27485 | Not Available | Positive | 42050 - 42337 | 10304.0 |
| amidohydrolase | At1D1609_RS27490 | Not Available | Positive | 42337 - 44316 | 72865.3 |
| doxx family protein | At1D1609_RS27495 | Not Available | Positive | 44530 - 44967 | 15256.0 |
| mfs transporter | At1D1609_RS27500 | Not Available | Positive | 44964 - 46562 | 55769.7 |
| yoak family protein | At1D1609_RS27505 | Not Available | Positive | 46732 - 47412 | 23147.0 |
| duf1622 domain-containing protein | At1D1609_RS27510 | Not Available | Positive | 47435 - 47830 | 14226.5 |
| marr family winged helix-turn-helix transcriptional regulator | At1D1609_RS27515 | Not Available | Negative | 48169 - 48567 | 14613.4 |
| tn3 family transposase | At1D1609_RS27520 | Not Available | Negative | 48859 - 50076 | 44648.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


