Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS27420 | Not Available | Positive | 29493 - 30488 | 36281.0 |
| sugar-binding transcriptional regulator | At1D1609_RS27425 | Not Available | Positive | 30509 - 31453 | 34534.5 |
| is630 family transposase | At1D1609_RS27430 | Not Available | Negative | 31466 - 32409 | 34875.9 |
| helix-turn-helix domain-containing protein | At1D1609_RS27435 | Not Available | Negative | 32687 - 33328 | 23634.6 |
| response regulator fixj | At1D1609_RS27445 | Not Available | Negative | 33821 - 34459 | 23121.9 |
| pas domain s-box protein | At1D1609_RS27450 | Not Available | Negative | 34446 - 35825 | 50132.3 |
| alpha/beta fold hydrolase | At1D1609_RS27455 | Not Available | Positive | 36894 - 37730 | 30235.7 |
| rid family hydrolase | At1D1609_RS27460 | Not Available | Positive | 37829 - 38290 | 16348.5 |
| gamma-glutamylcyclotransferase | At1D1609_RS27465 | Not Available | Positive | 38360 - 39091 | 27440.2 |
| lysr family transcriptional regulator | At1D1609_RS27470 | Not Available | Negative | 39078 - 39974 | 32840.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


