Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repb | At1D1609_RS27260 | Not Available | Positive | 1212 - 2213 | 37245.4 |
| plasmid replication protein repc | At1D1609_RS27265 | Not Available | Positive | 2407 - 3660 | 46347.6 |
| transposase | At1D1609_RS27270 | Not Available | Positive | 3744 - 4109 | 13096.8 |
| hypothetical protein | At1D1609_RS27280 | Not Available | Negative | 4735 - 4926 | 6898.53 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | At1D1609_RS27285 | Not Available | Positive | 5376 - 7550 | 79409.8 |
| cold-shock protein | At1D1609_RS27305 | Not Available | Positive | 9510 - 9719 | 7497.86 |
| hypothetical protein | At1D1609_RS27310 | Not Available | Positive | 9847 - 10074 | 8606.25 |
| hypothetical protein | At1D1609_RS27315 | Not Available | Positive | 10267 - 10542 | 10309.2 |
| tn3 family transposase | At1D1609_RS27320 | Not Available | Positive | 10687 - 11095 | 15213.1 |
| hypothetical protein | At1D1609_RS27325 | Not Available | Negative | 11259 - 11579 | 11663.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


