Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transfer signal peptidase traf | At1D1609_RS29220 | Not Available | Positive | 171074 - 171616 | 18675.6 |
| conjugal transfer protein trab | At1D1609_RS29225 | Not Available | Positive | 171606 - 172769 | 42047.4 |
| trah family protein | At1D1609_RS29230 | Not Available | Positive | 172786 - 173403 | 22048.4 |
| fic family protein | At1D1609_RS29235 | Not Available | Positive | 173635 - 175200 | 58227.6 |
| helix-turn-helix domain-containing protein | At1D1609_RS29240 | Not Available | Negative | 175314 - 175535 | 8502.2 |
| transcriptional repressor tram | At1D1609_RS29245 | Not Available | Positive | 175749 - 176069 | 11753.7 |
| autoinducer binding domain-containing protein | At1D1609_RS29250 | Not Available | Negative | 176073 - 176777 | 26149.5 |
| incp-type conjugal transfer protein trbi | At1D1609_RS29255 | Not Available | Negative | 177099 - 178394 | 47521.4 |
| conjugal transfer protein trbh | At1D1609_RS29260 | Not Available | Negative | 178406 - 178846 | 14975.0 |
| p-type conjugative transfer protein trbg | At1D1609_RS29265 | Not Available | Negative | 178850 - 179662 | 29010.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


