Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf736 domain-containing protein | At1D1609_RS29170 | Not Available | Positive | 161443 - 161754 | 11520.5 |
| voc family protein | At1D1609_RS29175 | Not Available | Negative | 161892 - 162329 | 15783.6 |
| hypothetical protein | At1D1609_RS29880 | Not Available | Positive | 162883 - 163056 | 6749.55 |
| thermonuclease family protein | At1D1609_RS29185 | Not Available | Negative | 163090 - 163539 | 16256.6 |
| wgr domain-containing protein | At1D1609_RS29190 | Not Available | Negative | 163609 - 163941 | 12740.2 |
| competence protein coia | At1D1609_RS29195 | Not Available | Negative | 164057 - 164845 | 30459.5 |
| ti-type conjugative transfer system protein trag | At1D1609_RS29200 | Not Available | Negative | 165074 - 166981 | 68908.7 |
| type iv conjugative transfer system coupling protein trad | At1D1609_RS29205 | Not Available | Negative | 166968 - 167183 | 7840.43 |
| conjugal transfer protein trac | At1D1609_RS29210 | Not Available | Negative | 167188 - 167496 | 10318.0 |
| ti-type conjugative transfer relaxase traa | At1D1609_RS29215 | Not Available | Positive | 167751 - 171077 | 122719.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


