Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein virb10 | At1D1609_RS26545 | Not Available | Positive | 20276 - 21409 | 40668.9 |
| p-type dna transfer atpase virb11 | At1D1609_RS26550 | Not Available | Positive | 21449 - 22480 | 38010.7 |
| response regulator | At1D1609_RS26555 | Not Available | Positive | 22612 - 23415 | 29957.3 |
| hypothetical protein | At1D1609_RS29570 | Not Available | Positive | 23474 - 23857 | 14184.2 |
| age family epimerase/isomerase | At1D1609_RS26565 | Not Available | Negative | 23913 - 24212 | 10775.8 |
| is66-like element is66 family transposase | At1D1609_RS26570 | Not Available | Negative | 24240 - 25895 | 61363.4 |
| is66 family insertion sequence element accessory protein tnpb | At1D1609_RS26575 | Not Available | Negative | 25941 - 26288 | 12732.8 |
| is66-like element accessory protein tnpa | At1D1609_RS26580 | Not Available | Negative | 26285 - 26692 | 15281.4 |
| is110 family transposase | At1D1609_RS26585 | Not Available | Negative | 27009 - 28127 | 40855.5 |
| age family epimerase/isomerase | At1D1609_RS26590 | Not Available | Negative | 28288 - 29226 | 34449.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


