Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix transcriptional regulator | At1D1609_RS29090 | Not Available | Positive | 138232 - 138609 | 14262.5 |
| glxa family transcriptional regulator | At1D1609_RS29095 | Not Available | Negative | 138715 - 139683 | 35192.6 |
| cysteine hydrolase family protein | At1D1609_RS29100 | Not Available | Positive | 139786 - 140328 | 19159.7 |
| mbl fold metallo-hydrolase | At1D1609_RS29105 | Not Available | Positive | 140451 - 141224 | 27960.4 |
| is66 family transposase | At1D1609_RS29630 | Not Available | Positive | 141450 - 141704 | 9589.12 |
| rida family protein | At1D1609_RS29110 | Not Available | Negative | 141851 - 142279 | 15360.5 |
| glxa family transcriptional regulator | At1D1609_RS29115 | Not Available | Positive | 142444 - 143421 | 36110.5 |
| arsr/smtb family transcription factor | At1D1609_RS29120 | Not Available | Positive | 143671 - 144120 | 16284.5 |
| is3 family transposase | At1D1609_RS29125 | Not Available | Negative | 144208 - 145439 | 46439.8 |
| hypothetical protein | At1D1609_RS29870 | Not Available | Positive | 146333 - 146509 | 6525.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


