Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glxa family transcriptional regulator | At1D1609_RS29040 | Not Available | Positive | 126138 - 127100 | 35445.5 |
| flavin reductase family protein | At1D1609_RS29045 | Not Available | Positive | 127343 - 127849 | 18009.1 |
| llm class flavin-dependent oxidoreductase | At1D1609_RS29050 | Not Available | Positive | 127955 - 129316 | 50082.2 |
| mfs transporter | At1D1609_RS29055 | Not Available | Positive | 129374 - 130714 | 48149.5 |
| nad-dependent succinate-semialdehyde dehydrogenase | At1D1609_RS29060 | Not Available | Positive | 130824 - 132293 | 52173.7 |
| lysr family transcriptional regulator | At1D1609_RS29065 | Not Available | Negative | 132295 - 133197 | 32776.9 |
| mfs transporter | At1D1609_RS29070 | Not Available | Positive | 133278 - 134456 | 40795.8 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | At1D1609_RS29075 | Not Available | Positive | 134505 - 135158 | 23530.3 |
| dj-1/pfpi family protein | At1D1609_RS29080 | Not Available | Negative | 135842 - 136573 | 25415.8 |
| nad(p)h-binding protein | At1D1609_RS29085 | Not Available | Negative | 137287 - 138144 | 30246.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


