Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | At1D1609_RS28990 | Not Available | Positive | 112840 - 113757 | 34124.8 |
| carbohydrate abc transporter permease | At1D1609_RS28995 | Not Available | Positive | 113754 - 114632 | 31819.0 |
| glycoside hydrolase family 127 protein | At1D1609_RS29000 | Not Available | Positive | 114632 - 116602 | 73698.1 |
| abc transporter atp-binding protein | At1D1609_RS29005 | Not Available | Positive | 116626 - 117738 | 40581.7 |
| arac family transcriptional regulator | At1D1609_RS29010 | Not Available | Positive | 118342 - 119319 | 36173.6 |
| methyl-accepting chemotaxis protein | At1D1609_RS29015 | Not Available | Positive | 119631 - 121553 | 68360.9 |
| chemotaxis protein chew | At1D1609_RS29020 | Not Available | Positive | 121592 - 122035 | 16234.0 |
| hd-gyp domain-containing protein | At1D1609_RS29025 | Not Available | Positive | 122187 - 123119 | 34136.2 |
| hypothetical protein | At1D1609_RS29030 | Not Available | Positive | 124134 - 124322 | 7123.89 |
| helix-turn-helix domain-containing protein | At1D1609_RS29035 | Not Available | Negative | 125055 - 125981 | 33914.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


