Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad/nadp-dependent octopine/nopaline dehydrogenase family protein | At1D1609_RS28940 | Not Available | Positive | 99472 - 100554 | 38672.6 |
| glycine c-acetyltransferase | At1D1609_RS28945 | Not Available | Positive | 100586 - 101788 | 43271.8 |
| nad-dependent epimerase/dehydratase family protein | At1D1609_RS28950 | Not Available | Positive | 101785 - 102759 | 36364.4 |
| tn3 family transposase | At1D1609_RS28955 | Not Available | Positive | 102809 - 103015 | 7341.81 |
| tn3 family transposase | At1D1609_RS28960 | Not Available | Positive | 103020 - 103445 | 15597.7 |
| calcium-binding protein | At1D1609_RS28965 | Not Available | Positive | 103799 - 106882 | 109726.0 |
| type i secretion system permease/atpase | At1D1609_RS28970 | Not Available | Positive | 107202 - 108866 | 58540.5 |
| hlyd family type i secretion periplasmic adaptor subunit | At1D1609_RS28975 | Not Available | Positive | 108863 - 110173 | 47526.4 |
| laci family dna-binding transcriptional regulator | At1D1609_RS28980 | Not Available | Positive | 110464 - 111471 | 36046.1 |
| abc transporter substrate-binding protein | At1D1609_RS28985 | Not Available | Positive | 111519 - 112757 | 43807.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


