Agrobacterium tumefaciens strain 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 1D1609 is a Gram-negative bacterium known for its role in plant pathology, particularly in causing crown gall disease. This strain is a free-living aerobe with a rod shape and possesses flagella, which contributes to its mobility. Its optimal growth temperature is 25°C, and it thrives in mesophilic conditions. The strain has a complex genomic structure, characterized by four replicons and two membranes. It exhibits a wide range of host specificity, affecting various members of the plant kingdom, particularly within the Viridiplantae. Notable hosts include Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice), among others. The bacterium's pathogenic effects manifest as tumors, specifically crown gall tumors, which can lead to significant agricultural damage. The ecological insight into Agrobacterium tumefaciens strain 1D1609 highlights its dual role in the environment: while it can be detrimental to crop health by inducing tumor formation, it also plays a role in genetic transfer and plant transformation, a feature that has been harnessed in biotechnology for the development of genetically modified plants. This duality underscores the importance of understanding such microorganisms in both ecological and agricultural contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 1D1609

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 1D1609
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609,

Gene Summary

Adenine Count

37209 bp

Thymine Count

37648 bp

Guanine Count

46427 bp

Cytosine Count

44833 bp

Genome Length

166117 bp

Protein-coding Genes

157 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ectoine/hydroxyectoine abc transporter permease subunit ehudAt1D1609_RS25320Not AvailableNegative2101788 - 210248025439.1
ectoine/hydroxyectoine abc transporter permease subunit ehucAt1D1609_RS25325Not AvailableNegative2102493 - 210315824170.2
ectoine/hydroxyectoine abc transporter substrate-binding protein ehubAt1D1609_RS25330Not AvailableNegative2103219 - 210407030220.9
n(2)-acetyl-l-2,4-diaminobutanoate deacetylase doebAt1D1609_RS25335Not AvailableNegative2104132 - 210514535713.7
ectoine hydrolase doeaAt1D1609_RS25340Not AvailableNegative2105150 - 210632843721.2
ectoine utilization protein eutcAt1D1609_RS25345Not AvailableNegative2106325 - 210733835969.1
hydroxyectoine utilization dehydratase eutbAt1D1609_RS25350Not AvailableNegative2107335 - 210835434896.3
plp-dependent aminotransferase family proteinAt1D1609_RS25355Not AvailableNegative2108423 - 210987152182.0
aspartate aminotransferase family proteinAt1D1609_RS25360Not AvailableNegative2110042 - 211144550453.5
nad-dependent succinate-semialdehyde dehydrogenaseAt1D1609_RS25365Not AvailableNegative2111459 - 211293752628.2

Displaying genes 2471 – 2480 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total