Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | At1D1609_RS28825 | Not Available | Positive | 81556 - 82158 | 22111.3 |
| duf736 family protein | At1D1609_RS28830 | Not Available | Positive | 82268 - 82447 | 6305.47 |
| hypothetical protein | At1D1609_RS28835 | Not Available | Negative | 82490 - 82765 | 10189.0 |
| is66 family transposase | At1D1609_RS28840 | Not Available | Negative | 82774 - 84429 | 61358.4 |
| is66 family insertion sequence element accessory protein tnpb | At1D1609_RS28845 | Not Available | Negative | 84475 - 84822 | 12710.8 |
| is66-like element accessory protein tnpa | At1D1609_RS28850 | Not Available | Negative | 84819 - 85217 | 15033.1 |
| is110 family transposase | At1D1609_RS28855 | Not Available | Negative | 85534 - 86652 | 40855.5 |
| tn3 family transposase | At1D1609_RS30145 | Not Available | Positive | 86810 - 86922 | 4056.64 |
| tn3 family transposase | At1D1609_RS28870 | Not Available | Negative | 87361 - 90336 | 111781.0 |
| tn3 family transposase | At1D1609_RS30150 | Not Available | Positive | 90520 - 90732 | 7822.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


