Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609,
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase | At1D1609_RS24720 | Not Available | Positive | 1965670 - 1966212 | 20654.2 |
| efflux rnd transporter permease subunit | At1D1609_RS24725 | Not Available | Negative | 1966450 - 1969602 | 111763.0 |
| efflux rnd transporter periplasmic adaptor subunit | At1D1609_RS24730 | Not Available | Negative | 1969604 - 1970764 | 41164.9 |
| response regulator transcription factor | At1D1609_RS24735 | Not Available | Positive | 1971042 - 1971716 | 24602.1 |
| sensor histidine kinase | At1D1609_RS24740 | Not Available | Positive | 1971713 - 1973047 | 48663.9 |
| duf3313 domain-containing protein | At1D1609_RS24745 | Not Available | Positive | 1973156 - 1974034 | 30559.7 |
| hydrogen peroxide-inducible genes activator | At1D1609_RS24750 | Not Available | Negative | 1974098 - 1975006 | 33171.9 |
| catalase/peroxidase hpi | At1D1609_RS24755 | Not Available | Positive | 1975216 - 1977387 | 78819.4 |
| hypothetical protein | At1D1609_RS29815 | Not Available | Negative | 1977542 - 1977718 | 6123.98 |
| helix-turn-helix domain-containing protein | At1D1609_RS24760 | Not Available | Positive | 1977936 - 1978829 | 33001.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


