Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | At1D1609_RS28780 | Not Available | Positive | 75060 - 75167 | 4436.41 |
| tn3 family transposase | At1D1609_RS30135 | Not Available | Negative | 75255 - 75398 | 5325.24 |
| chemotaxis protein chew | At1D1609_RS28790 | Not Available | Negative | 75818 - 76291 | 16782.5 |
| methyl-accepting chemotaxis protein | At1D1609_RS28795 | Not Available | Negative | 76291 - 78075 | 63542.8 |
| helix-turn-helix transcriptional regulator | At1D1609_RS28800 | Not Available | Negative | 78384 - 79115 | 26983.3 |
| tn3 family transposase | At1D1609_RS30140 | Not Available | Positive | 79403 - 79697 | 10736.7 |
| tn3 family transposase | At1D1609_RS28810 | Not Available | Positive | 79709 - 79945 | 8414.21 |
| hypothetical protein | At1D1609_RS29620 | Not Available | Positive | 80027 - 80389 | 13070.3 |
| duf736 domain-containing protein | At1D1609_RS28815 | Not Available | Positive | 80547 - 80843 | 10802.8 |
| dinb family protein | At1D1609_RS28820 | Not Available | Negative | 80929 - 81456 | 19744.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


