Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | At1D1609_RS28730 | Not Available | Positive | 66079 - 66424 | 12798.3 |
| gntr family transcriptional regulator | At1D1609_RS28735 | Not Available | Negative | 66600 - 67232 | 23960.8 |
| abc transporter atp-binding protein | At1D1609_RS28740 | Not Available | Negative | 67330 - 68406 | 39161.8 |
| aldehyde dehydrogenase family protein | At1D1609_RS28745 | Not Available | Negative | 68408 - 69838 | 51030.1 |
| gnat family n-acetyltransferase | At1D1609_RS28750 | Not Available | Negative | 69835 - 70323 | 18181.5 |
| extracellular solute-binding protein | At1D1609_RS28755 | Not Available | Positive | 70434 - 71474 | 38265.3 |
| abc transporter permease | At1D1609_RS28760 | Not Available | Positive | 71490 - 72338 | 30612.5 |
| abc transporter permease | At1D1609_RS28765 | Not Available | Positive | 72335 - 73165 | 29236.5 |
| acetoacetate decarboxylase family protein | At1D1609_RS28770 | Not Available | Positive | 73191 - 74027 | 30643.4 |
| 3-hydroxyacyl-coa dehydrogenase family protein | At1D1609_RS28775 | Not Available | Positive | 74024 - 74977 | 34661.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


