Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| age family epimerase/isomerase | At1D1609_RS26490 | Not Available | Positive | 11904 - 12668 | 26935.0 |
| type iv secretion system lytic transglycosylase virb1 | At1D1609_RS26500 | Not Available | Positive | 13045 - 13764 | 25953.4 |
| pilin major subunit virb2 | At1D1609_RS26505 | Not Available | Positive | 13836 - 14144 | 9927.32 |
| type iv secretion system protein virb3 | At1D1609_RS26510 | Not Available | Positive | 14144 - 14470 | 11760.7 |
| virb4 family type iv secretion/conjugal transfer atpase | At1D1609_RS26515 | Not Available | Positive | 14470 - 16839 | 87366.0 |
| pilin minor subunit virb5 | At1D1609_RS26520 | Not Available | Positive | 16854 - 17516 | 23451.9 |
| type iv secretion system protein | At1D1609_RS26525 | Not Available | Positive | 17613 - 18500 | 31773.2 |
| type iv secretion system lipoprotein virb7 | At1D1609_RS26530 | Not Available | Positive | 18534 - 18701 | 5930.19 |
| type iv secretion system protein virb8 | At1D1609_RS26535 | Not Available | Positive | 18688 - 19401 | 26159.1 |
| p-type conjugative transfer protein virb9 | At1D1609_RS26540 | Not Available | Positive | 19398 - 20279 | 32174.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


