Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv toxin-antitoxin system abiei family antitoxin domain-containing protein | At1D1609_RS28580 | Not Available | Positive | 31425 - 32252 | 30848.1 |
| nucleotidyl transferase abieii/abigii toxin family protein | At1D1609_RS28585 | Not Available | Positive | 32249 - 33133 | 32980.6 |
| restriction endonuclease | At1D1609_RS28590 | Not Available | Negative | 33339 - 34517 | 44425.1 |
| hypothetical protein | At1D1609_RS28595 | Not Available | Positive | 34741 - 36042 | 48371.2 |
| hypothetical protein | At1D1609_RS28600 | Not Available | Positive | 36190 - 36855 | 25415.2 |
| tn3 family transposase | At1D1609_RS28605 | Not Available | Positive | 36927 - 37279 | 13044.7 |
| type iv toxin-antitoxin system abiei family antitoxin | At1D1609_RS28610 | Not Available | Positive | 37544 - 38620 | 39527.1 |
| nucleotidyl transferase abieii/abigii toxin family protein | At1D1609_RS28615 | Not Available | Positive | 38608 - 39477 | 31522.6 |
| abc-three component system protein | At1D1609_RS28620 | Not Available | Positive | 39595 - 40641 | 39159.5 |
| abc-three component system middle component 8 | At1D1609_RS28625 | Not Available | Positive | 40619 - 40867 | 9413.61 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


