Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0489 family protein | At1D1609_RS28530 | Not Available | Negative | 17976 - 18782 | 30398.2 |
| helix-turn-helix domain-containing protein | At1D1609_RS28535 | Not Available | Positive | 18919 - 19998 | 40666.4 |
| hypothetical protein | At1D1609_RS28540 | Not Available | Positive | 20009 - 20926 | 34931.1 |
| recombinase family protein | At1D1609_RS28545 | Not Available | Negative | 20959 - 21552 | 21446.8 |
| tn3 family transposase | At1D1609_RS28550 | Not Available | Positive | 21717 - 24692 | 110556.0 |
| glycerophosphodiester phosphodiesterase family protein | At1D1609_RS28555 | Not Available | Negative | 24702 - 25691 | 36078.6 |
| shedu anti-phage system protein sdua domain-containing protein | At1D1609_RS28560 | Not Available | Negative | 26312 - 27187 | 34017.5 |
| res domain-containing protein | At1D1609_RS28565 | Not Available | Positive | 27483 - 28943 | 54208.4 |
| hypothetical protein | At1D1609_RS28570 | Not Available | Positive | 29150 - 30214 | 40655.8 |
| hypothetical protein | At1D1609_RS28575 | Not Available | Positive | 30448 - 31263 | 31110.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


