Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | At1D1609_RS28475 | Not Available | Positive | 3861 - 4400 | 19602.4 |
| hypothetical protein | At1D1609_RS29615 | Not Available | Positive | 4931 - 5698 | 28675.9 |
| macro domain-containing protein | At1D1609_RS28490 | Not Available | Negative | 6100 - 7575 | 53767.3 |
| duf4433 domain-containing protein | At1D1609_RS28495 | Not Available | Negative | 7596 - 8915 | 48081.4 |
| tn3 family transposase | At1D1609_RS28500 | Not Available | Negative | 9119 - 9943 | 29880.9 |
| site-specific integrase | At1D1609_RS28505 | Not Available | Negative | 10043 - 11176 | 40830.8 |
| duf1403 family protein | At1D1609_RS28510 | Not Available | Positive | 11289 - 12254 | 34592.0 |
| smc-scp complex subunit scpb | At1D1609_RS28515 | Not Available | Positive | 12257 - 12964 | 25806.4 |
| hypothetical protein | At1D1609_RS28520 | Not Available | Negative | 13044 - 15986 | 109115.0 |
| hypothetical protein | At1D1609_RS28525 | Not Available | Negative | 16315 - 17961 | 62311.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


