Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| entry exclusion protein trbk | At1D1609_RS27220 | Not Available | Negative | 159987 - 160214 | 8023.47 |
| p-type conjugative transfer protein trbj | At1D1609_RS27225 | Not Available | Negative | 160211 - 161020 | 29772.1 |
| conjugal transfer protein trbe | At1D1609_RS27230 | Not Available | Negative | 160992 - 163454 | 91479.4 |
| conjugal transfer protein trbd | At1D1609_RS27235 | Not Available | Negative | 163465 - 163764 | 11248.2 |
| conjugal transfer pilin trbc | At1D1609_RS27240 | Not Available | Negative | 163757 - 164161 | 13555.4 |
| p-type conjugative transfer atpase trbb | At1D1609_RS27245 | Not Available | Negative | 164151 - 165122 | 34845.8 |
| acyl-homoserine-lactone synthase | At1D1609_RS27250 | Not Available | Negative | 165119 - 165757 | 23399.2 |
| plasmid partitioning protein repa | At1D1609_RS28460 | Not Available | Positive | 1 - 1188 | 44462.5 |
| plasmid partitioning protein repb | At1D1609_RS28465 | Not Available | Positive | 1273 - 2265 | 36473.0 |
| plasmid replication protein repc | At1D1609_RS28470 | Not Available | Positive | 2422 - 3666 | 45711.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


