Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | At1D1609_RS27170 | Not Available | Negative | 149156 - 149578 | 15386.3 |
| abc transporter permease | At1D1609_RS27175 | Not Available | Positive | 149969 - 150910 | 34080.2 |
| abc transporter permease | At1D1609_RS27180 | Not Available | Positive | 150907 - 151788 | 31462.7 |
| abc transporter atp-binding protein | At1D1609_RS27185 | Not Available | Positive | 151788 - 153554 | 63211.2 |
| abc transporter substrate-binding protein | At1D1609_RS27190 | Not Available | Positive | 153670 - 155238 | 57474.1 |
| incp-type conjugal transfer protein trbi | At1D1609_RS27195 | Not Available | Negative | 155471 - 156772 | 47260.8 |
| conjugal transfer protein trbh | At1D1609_RS27200 | Not Available | Negative | 156782 - 157258 | 16225.7 |
| p-type conjugative transfer protein trbg | At1D1609_RS27205 | Not Available | Negative | 157258 - 158112 | 30690.1 |
| conjugal transfer protein trbf | At1D1609_RS27210 | Not Available | Negative | 158129 - 158791 | 24670.2 |
| p-type conjugative transfer protein trbl | At1D1609_RS27215 | Not Available | Negative | 158806 - 159993 | 40044.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


