Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | At1D1609_RS27125 | Not Available | Negative | 137672 - 138499 | 29356.8 |
| abc transporter permease | At1D1609_RS27130 | Not Available | Negative | 138496 - 139467 | 34976.0 |
| abc transporter atp-binding protein | At1D1609_RS27135 | Not Available | Negative | 139467 - 141176 | 62174.6 |
| hypothetical protein | At1D1609_RS29840 | Not Available | Positive | 141451 - 141729 | 10507.3 |
| nad(p)/fad-dependent oxidoreductase | At1D1609_RS27140 | Not Available | Positive | 141660 - 142973 | 46981.4 |
| hydantoinase/oxoprolinase family protein | At1D1609_RS27145 | Not Available | Positive | 143014 - 145068 | 73265.2 |
| hydantoinase b/oxoprolinase family protein | At1D1609_RS27150 | Not Available | Positive | 145065 - 146717 | 59348.5 |
| hypothetical protein | At1D1609_RS29600 | Not Available | Positive | 146924 - 147508 | 21195.4 |
| age family epimerase/isomerase | At1D1609_RS30090 | Not Available | Negative | 147873 - 148010 | 5548.44 |
| deor/glpr family dna-binding transcription regulator | At1D1609_RS27165 | Not Available | Negative | 148212 - 149072 | 31600.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


