Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609
Gene Summary
Adenine Count
37209 bp
Thymine Count
37648 bp
Guanine Count
46427 bp
Cytosine Count
44833 bp
Genome Length
166117 bp
Protein-coding Genes
157 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine cyclodeaminase | At1D1609_RS26970 | Not Available | Negative | 106370 - 107440 | 39168.2 |
| rida family protein | At1D1609_RS26980 | Not Available | Negative | 107733 - 108077 | 12577.2 |
| opine oxidase subunit ooxa | At1D1609_RS26985 | Not Available | Negative | 108074 - 109582 | 53057.0 |
| (2fe-2s)-binding protein | At1D1609_RS26990 | Not Available | Negative | 109579 - 109902 | 11502.9 |
| opine oxidase subunit ooxb | At1D1609_RS26995 | Not Available | Negative | 109883 - 110998 | 39941.6 |
| octopine abc transporter substrate-binding protein occt | At1D1609_RS27000 | Not Available | Negative | 111071 - 111901 | 28987.9 |
| octopine abc transporter atp-binding protein occp | At1D1609_RS27005 | Not Available | Negative | 111957 - 112745 | 28969.9 |
| octopine abc transporter permease occm | At1D1609_RS27010 | Not Available | Negative | 112738 - 113475 | 27488.2 |
| octopine abc transporter permease occq | At1D1609_RS27015 | Not Available | Negative | 113475 - 114188 | 24802.5 |
| otopine catabolism/uptake operon transcriptional regulator occr | At1D1609_RS27020 | Not Available | Positive | 114338 - 115234 | 32668.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


