Helicobacter pylori strain dRdM2addM2

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain dRdM2addM2 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella, which contribute to its motility. This strain is primarily host-associated, with Homo sapiens being a significant host, alongside other species such as Gallus gallus, various birds (Aves), primates, and rodents (Rodentia, Cricetinae). It is classified as free-living within its host environments. The optimal growth temperature for strain dRdM2addM2 is 37°C, placing it within the mesophilic temperature range. This organism has a single replicon and consists of two membranes, typical of Gram-negative bacteria. Helicobacter pylori is well-known for its pathogenic effects on human health, being linked to various gastrointestinal diseases. The strain dRdM2addM2 is associated with chronic gastric inflammation, gastric ulcers, and more severe conditions such as gastric cancer and mucosa-associated lymphoid tissue lymphoma. Other health impacts include functional dyspepsia, atrophic gastritis, and peptic ulcer disease. The ecological insight derived from the presence of H. pylori within diverse hosts indicates its adaptability and potential role in complex host-microbiome interactions. This adaptability could influence the development of gastrointestinal diseases, highlighting the importance of understanding H. pylori's biology and pathogenicity in both human and animal health contexts. The accessions for this strain can be found under NZ_CP026515.1.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain dRdM2addM2

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain dRdM2addM2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain dRdM2addM2 chromosome, complete genome.

Gene Summary

Adenine Count

505958 bp

Thymine Count

513854 bp

Guanine Count

321473 bp

Cytosine Count

327450 bp

Genome Length

1668735 bp

Protein-coding Genes

1564 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane beta-barrel protein hofgC2844_RS04660Not AvailableNegative969308 - 97085258857.6
duf3944 domain-containing proteinC2844_RS04665Not AvailableNegative971098 - 97353586186.4
hypothetical proteinC2844_RS04680Not AvailableNegative973795 - 97422616137.5
carbamoyl-phosphate synthase large subunitC2844_RS04685Not AvailableNegative974231 - 977488120081.0
bax inhibitor-1/ycca family proteinC2844_RS04690Not AvailableNegative977587 - 97827925142.5
type i glyceraldehyde-3-phosphate dehydrogenaseC2844_RS04695Not AvailablePositive978423 - 97942137319.6
vacuolating cytotoxin domain-containing proteinC2844_RS04700Not AvailablePositive979502 - 987091274578.0
hop family outer membrane protein hopj/hopkC2844_RS04705Not AvailablePositive987143 - 98825241973.0
2-hydroxymuconate tautomerase family proteinC2844_RS04710Not AvailableNegative988312 - 9885187512.07
recombination mediator recrC2844_RS04715Not AvailablePositive988674 - 98925522009.4

Displaying genes 911 – 920 of 1609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total