Pseudomonadaceae bacterium SI-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Description

Pseudomonadaceae bacterium SI-3 is characterized by having a single replicon, which is a notable trait for its genomic structure. The organism is cataloged under the accession number NZ_CP026511.1, indicating its sequence data is accessible for further studies. The Pseudomonadaceae family is known for its ecological significance and diverse metabolic capabilities. Members of this family are often found in various environments, including soil, water, and plant surfaces, where they play crucial roles in nutrient cycling and bioremediation processes. The presence of a single replicon suggests that Pseudomonadaceae bacterium SI-3 may exhibit a streamlined genomic organization, which can be advantageous for rapid growth and adaptability in fluctuating environmental conditions. This trait may facilitate efficient replication and potentially quick responses to ecological challenges. In summary, Pseudomonadaceae bacterium SI-3, with its single replicon and documented genomic information, represents a species within a family renowned for its ecological versatility. Understanding its genomic characteristics can provide insights into its adaptability and functionality within its ecological niche.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonadaceae bacterium SI-3 chromosome, complete genome.

Gene Summary

Adenine Count

962262 bp

Thymine Count

962681 bp

Guanine Count

1458492 bp

Cytosine Count

1455172 bp

Genome Length

4838607 bp

Protein-coding Genes

4379 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-binding and (fe-s)-binding domain-containing proteinC1896_RS04860Not AvailableNegative1009512 - 1012349103026.0
fmn-dependent l-lactate dehydrogenase llddC1896_RS04865Not AvailableNegative1012422 - 101359142471.3
l-lactate permeaseC1896_RS04870Not AvailableNegative1013763 - 101545758978.1
gntr family transcriptional regulatorC1896_RS04875Not AvailablePositive1015740 - 101652829392.1
ssra-binding protein smpbC1896_RS04880Not AvailableNegative1016599 - 101708118124.2
type ii toxin-antitoxin system rata family toxinC1896_RS04885Not AvailablePositive1017310 - 101774416003.2
rnfh family proteinC1896_RS04890Not AvailablePositive1017737 - 101806611775.3
outer membrane protein assembly factor bameC1896_RS04895Not AvailableNegative1018128 - 101863418319.7
ferric iron uptake transcriptional regulatorC1896_RS04900Not AvailablePositive1018728 - 101913515314.4
dna repair protein recnC1896_RS04905Not AvailableNegative1019426 - 102110261091.1

Displaying genes 981 – 990 of 4464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.