Pseudomonadaceae bacterium SI-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Description

Pseudomonadaceae bacterium SI-3 is characterized by having a single replicon, which is a notable trait for its genomic structure. The organism is cataloged under the accession number NZ_CP026511.1, indicating its sequence data is accessible for further studies. The Pseudomonadaceae family is known for its ecological significance and diverse metabolic capabilities. Members of this family are often found in various environments, including soil, water, and plant surfaces, where they play crucial roles in nutrient cycling and bioremediation processes. The presence of a single replicon suggests that Pseudomonadaceae bacterium SI-3 may exhibit a streamlined genomic organization, which can be advantageous for rapid growth and adaptability in fluctuating environmental conditions. This trait may facilitate efficient replication and potentially quick responses to ecological challenges. In summary, Pseudomonadaceae bacterium SI-3, with its single replicon and documented genomic information, represents a species within a family renowned for its ecological versatility. Understanding its genomic characteristics can provide insights into its adaptability and functionality within its ecological niche.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonadaceae bacterium SI-3 chromosome, complete genome.

Gene Summary

Adenine Count

962262 bp

Thymine Count

962681 bp

Guanine Count

1458492 bp

Cytosine Count

1455172 bp

Genome Length

4838607 bp

Protein-coding Genes

4379 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinC1896_RS00275Not AvailablePositive53471 - 5449637460.8
dna-processing protein dpraC1896_RS00280Not AvailablePositive54581 - 5567238104.1
l-threonylcarbamoyladenylate synthaseC1896_RS00285Not AvailablePositive55736 - 5629320455.5
quinone oxidoreductase family proteinC1896_RS00290Not AvailableNegative56322 - 5729934164.9
oxygen-dependent coproporphyrinogen oxidaseC1896_RS00295Not AvailablePositive57454 - 5837134757.6
shikimate dehydrogenaseC1896_RS00300Not AvailablePositive58417 - 5923529028.8
nad(p)-dependent oxidoreductaseC1896_RS00305Not AvailableNegative59243 - 5985121581.7
glycine zipper domain-containing proteinC1896_RS00310Not AvailableNegative59867 - 6017811793.8
d-alanyl-d-alanine endopeptidaseC1896_RS00315Not AvailablePositive60596 - 6153734035.6
alpha/beta-hydrolase family proteinC1896_RS00320Not AvailableNegative61600 - 618037215.23

Displaying genes 71 – 80 of 4464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.