Pseudomonadaceae bacterium SI-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Description

Pseudomonadaceae bacterium SI-3 is characterized by having a single replicon, which is a notable trait for its genomic structure. The organism is cataloged under the accession number NZ_CP026511.1, indicating its sequence data is accessible for further studies. The Pseudomonadaceae family is known for its ecological significance and diverse metabolic capabilities. Members of this family are often found in various environments, including soil, water, and plant surfaces, where they play crucial roles in nutrient cycling and bioremediation processes. The presence of a single replicon suggests that Pseudomonadaceae bacterium SI-3 may exhibit a streamlined genomic organization, which can be advantageous for rapid growth and adaptability in fluctuating environmental conditions. This trait may facilitate efficient replication and potentially quick responses to ecological challenges. In summary, Pseudomonadaceae bacterium SI-3, with its single replicon and documented genomic information, represents a species within a family renowned for its ecological versatility. Understanding its genomic characteristics can provide insights into its adaptability and functionality within its ecological niche.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonadaceae bacterium SI-3 chromosome, complete genome.

Gene Summary

Adenine Count

962262 bp

Thymine Count

962681 bp

Guanine Count

1458492 bp

Cytosine Count

1455172 bp

Genome Length

4838607 bp

Protein-coding Genes

4379 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseC1896_RS21400Not AvailablePositive4628653 - 462956432784.2
atp-binding proteinC1896_RS21405Not AvailablePositive4629666 - 463146567257.7
sigma-54-dependent transcriptional regulatorC1896_RS21410Not AvailablePositive4631467 - 463285850736.0
c4-dicarboxylate trap substrate-binding protein dctpC1896_RS21415Not AvailablePositive4633241 - 463423636901.1
trap transporter small permeaseC1896_RS21420Not AvailablePositive4634477 - 463510323104.2
c4-dicarboxylate trap transporter large permease protein dctmC1896_RS21425Not AvailablePositive4635104 - 463638444710.4
2og-fe(ii) oxygenaseC1896_RS21430Not AvailableNegative4636445 - 463705322821.1
hypothetical proteinC1896_RS21435Not AvailablePositive4637161 - 463791327246.1
alpha/beta hydrolaseC1896_RS21440Not AvailableNegative4637939 - 463887735378.5
duf6436 domain-containing proteinC1896_RS21445Not AvailablePositive4638964 - 463958121956.1

Displaying genes 4271 – 4280 of 4464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.