Tamlana carrageenivorans strain UJ94

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Pseudotamlana

Description

Tamlana carrageenivorans strain UJ94 is characterized by a single replicon, indicating a streamlined genomic structure suitable for its ecological niche. The strain is cataloged under the accession number NZ_CP025938.1, which provides a reference for its genetic material in microbial databases. This bacterium is notable for its ability to degrade carrageenan, a polysaccharide commonly found in red algae. This capability suggests that Tamlana carrageenivorans plays a significant role in the microbial ecology of marine environments, particularly in the breakdown of algal biomass. Such degradation processes are crucial for nutrient cycling and energy flow in coastal ecosystems, where algal blooms can impact local biodiversity and water quality. The single replicon structure may also imply a potential adaptation to specific environmental conditions, allowing for efficient resource utilization in its habitat. By participating in the decomposition of carrageenan, Tamlana carrageenivorans strain UJ94 not only contributes to the recycling of organic materials but also influences the dynamics of microbial communities associated with algae. In summary, Tamlana carrageenivorans strain UJ94, with its single replicon and carrageenan-degrading capabilities, exemplifies a specialized bacterium that contributes to the ecological balance in marine environments through the decomposition of algal polysaccharides.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPseudotamlana
SpeciesPseudotamlana carrageenivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tamlana carrageenivorans strain UJ94 chromosome, complete genome.

Gene Summary

Adenine Count

1336167 bp

Thymine Count

1329418 bp

Guanine Count

724468 bp

Cytosine Count

726490 bp

Genome Length

4116543 bp

Protein-coding Genes

3521 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazolonepropionaseC1A40_RS01035Not AvailableNegative217398 - 21863645264.9
urocanate hydrataseC1A40_RS01040Not AvailableNegative218725 - 22072274481.5
histidine ammonia-lyaseC1A40_RS01045Not AvailableNegative222103 - 22360254939.6
lysr family transcriptional regulatorC1A40_RS01050Not AvailablePositive223692 - 22458533907.0
dead/deah box helicaseC1A40_RS01055Not AvailablePositive224886 - 22670968320.8
carboxypeptidase-like regulatory domain-containing proteinC1A40_RS01060Not AvailablePositive226950 - 22772929160.1
trmh family rna methyltransferaseC1A40_RS01065Not AvailableNegative227921 - 22857725483.4
sir2 family nad-dependent protein deacylaseC1A40_RS01070Not AvailablePositive228700 - 22937425181.5
formylglycine-generating enzyme family proteinC1A40_RS01075Not AvailablePositive229501 - 23025928600.5
polysaccharide lyase family 7 proteinC1A40_RS01080Not AvailablePositive230417 - 23133134294.5

Displaying genes 301 – 310 of 3631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.